Samtools使用大全 - 简书
网页2019年10月28日 · Samtools是一个用于操作sam和bam格式文件的应用程序集合，具有众多的功能。. 它从SAM（序列比对/映射）格式导入和导出，进行排序，合并和索引，并允许快速检索任何区域中的读数。. SAM和BAM格式的比对文件主要由bwa、bowtie2、tophat和hisat2等序列比对工具产生 ...
SAMTOOLS使用手册 - ～Anti - 博客园
网页2021年1月3日 · Samtools is a set of utilities that manipulate alignments in the BAM format. It imports from and exports to the SAM (Sequence Alignment/Map) format, does sorting, merging and indexing, and allows to retrieve reads in any regions swiftly. Samtools is designed to work on a stream.
BWA使用详解 - 简书
网页2020年5月4日 · 先使用 aln 命令将单独的 reads 比对到参考序列，再使用 samse 或 sampe 生成 sam 文件。常用例子：
augur.translate module — augur documentation - Nextstrain
网页augur.translate.translate_feature (aln, feature) ¶ Translates a subsequence of input nucleotide sequences. Parameters. aln (dict) – sequences indexed by node name. feature (Bio.Seq.Seq) – BioPython sequence feature. Returns. translated sequences indexed by node name. Return type. dict. augur.translate.translate_vcf_feature (sequences, ref ...
CoDIAC.translateFeatures — CoDIAC 1 documentation
网页Returns-----aln_dict: dictionary of alignments between the input_sequence and either the sequences in the match_list, or all sequences in the reference_dict. """ aln_dict = {} if len (match_list): for ref_header in match_list: aln_dict [ref_header] = returnAlignment (input_sequence, reference_dict [ref_header]) else: for ref_header in reference ...
RAD_Tools/VCF2phy.py at master · CoBiG2/RAD_Tools - GitHub
网页return dict((tx, "".join(seq)) for tx, seq in total_aln.items()), seq_lens def write_to_phy(aln_dict, seq_lens, output_file): Writes a alignment dictionary {taxon: seq} to a phylip file
pairk.utilities — pairk documentation
网页def fasta_MSA_to_idr_dict (alignment_file: str | Path, idr_aln_start: int, idr_aln_end: int)-> dict [str, str]: """import a multiple sequence alignment (MSA) in fasta format and return the IDR sequences as a dictionary. uses a single slice …
Introduction to SeqIO - Biopython
网页The function Bio.SeqIO.to_dict() will use the record ID as the dictionary key by default, but you can specify any mapping you like with its optional argument, key_function. For larger files, it isn’t possible to hold everything in memory, so Bio.SeqIO.to_dict is not suitable.
《欧路词典》英语在线词典_英语翻译_Mac词典_苹果系统词霸_每 …
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欧路词典|英汉-汉英词典 ALN是什么意思_ALN的中文解释和发音_ALN的翻译_ALN …
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